The name of the ship's computer in Metroid Fusion is Adam. Samus gives the navigation computer this nickname in memory of Adam Malkovich, her former commanding officer in the Galactic Federation army.
Throughout the game, Adam directs Samus during her mission aboard the Biologic Space Laboratories research station. He assigns her objectives, explains the station's systems, and warns her about the X parasites and the dangerous SA-X. His speech patterns and advice gradually make the computer seem more like a person than a routine artificial intelligence.
Near the end of the game, Samus realizes that the computer contains Adam Malkovich's consciousness or personality. This explains why it sometimes challenges Federation orders and offers unusually personal guidance. The computer is therefore not simply named after Adam as a casual reference; it is strongly connected to the real Adam.
A common mix-up is choosing Adam Malkovich as the answer. That is the human identity behind the computer, while Adam is the name Samus uses for the computer itself. Mother Brain is a separate Metroid antagonist and does not operate Samus's ship.